Added in generic 'blink' programs in the examples in C, RTB and Shell.
Updated wiringPi with a little big-file on the millis() function and
added in a new micros() function too.
Updated the examples with standard LGPL headers.
Added a new isr-osc.c test program - just for ISR timing purposes.

on non Raspbian systems (and even on some Raspbian systems it would appear ):

fixed a timing issue on softTone
fixed some issues in wiringPisetup introduced when optimising the mmap calls.

and developed the new ISR - Interrupt Service Routine
handler - much easier than the old waitForInterrupt code!

Minor tweaks to the gpio program to recognise the environment variable
WIRINGPI_DEBUG too, and removed the printing of the errors from the
main wiringPi setup routines (and added some new ones!)

Also Makefile tweaks to help improve things somewhat - decided to
read the Makefile manual after some 15 years to updated my make
grey cells somewhat.

New command in the gpio command - readall

Updated wiringPi to add new PWM controls.